Pathways Knowledge Library

Over 400 well-characterized and interactive metabolic and
cell signaling pathways

Browse canonical pathways by category

Browse canonical pathways

Cellular Activity, Metabolism and Homeostasis

Disease

General Signal Transduction

Immunology & Inflammation

Neurology

Organism Physiology

Stem Cells & Development

Quantinova - New Generation of Real-Time PCR Products

The emergence of the Omicron variant has necessitated greater scrutiny into SARS-CoV-2 variants. Explore how whole viral genome next-generation sequencing can help build an accurate picture of circulating variants.

New Tools and Calculators

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FAQ

Don't have your own data at hand? Browse our library of sample files that you can use to try out the analysis pipeline.

What third-party library prep kits can I use?

he RNA-seq Analysis Portal now also supports analysis of data generated from most commonly used library prep kits.

Another RAP important Q&A

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Another RAP important Q&A

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Another RAP important Q&A

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SEO Description

Apoptosis is a coordinated, energy-dependent process that involves the activation of a group of cysteine proteases called caspases and a cascade of events that link the initiating stimuli to programmed cell death. Caspases in apoptosis are broadly divided into initiators (caspases 2, 8, 9 and 10) and executioners (caspases 3, 6 and 7). The two main pathways of apoptosis are the intrinsic and extrinsic pathways. Each pathway requires specific triggers to initiate a cascade of molecular events that converge at the stage of caspase 3 activation. The activation of caspase 3 in turn triggers an execution pathway resulting in characteristic cytomorphological features including cell shrinkage, membrane blebbing, chromatin condensation and DNA fragmentation.

The intrinsic signaling pathways that initiate apoptosis involve non-receptor-mediated intracellular signals (e.g. DNA damage, radiation) that cause changes in the inner mitochondrial membrane. The end result is a change in mitochondrial transmembrane potential and release of two main groups of pro-apoptotic proteins from the intermembrane space into the cytosol. The first group consists of cytochrome c (CYTC), SMAC/DIABLO, and the serine protease high temperature requirement protein A2 (HTRA2/OMI). These proteins activate the caspase-dependent mitochondrial pathway. CYTC binds and activates apoptotic peptidase activating factor 1(APAF-1) as well as procaspase-9, forming an apoptosome leading to caspase-9 activation. SMAC/DIABLO and HTRA2/OMI promote apoptosis by inhibiting IAP (inhibitors of apoptosi